BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018G08LP1|AL427374
(404 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig171 426 e-119
>3x_Contig171
Length = 902
Score = 426 bits (204), Expect = e-119
Identities = 235/257 (91%)
Strand = Plus / Plus
Query: 1 ccagatttgtctttcaccgcttaacacaactcatcagatgatattgcaacatcaacctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ccagatttgtctttcaccgcttaacacaactcatcagatgatattgcaacatcaacctgt 243
Query: 61 tcgaccgtttccgtctggtcatattaagatcgtccgctttcgggtcaattaatattaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tcgaccgtttccgtctggtcatattaagatcgtccgctttcgggtcaattaatattaact 303
Query: 121 aattatttatatataavartatatataaatnatadatacnnngtttatatkcmvattatt 180
|||||||||||||||| | ||||||||||| ||| |||| |||||||| | ||||||
Sbjct: 304 aattatttatatataaaaatatatataaattatatatacaatgtttatattcaaattatt 363
Query: 181 tatmatvntttnsbyntbatbbbgctaatactaattacttgctgacccattatacaaaag 240
||| || ||| | || |||||||||||||||||||||||||||||||||||||
Sbjct: 364 tataataatttaattattattttgctaatactaattacttgctgacccattatacaaaag 423
Query: 241 gtacgttattaatatat 257
|||||||||||||||||
Sbjct: 424 gtacgttattaatatat 440
Score = 169 bits (81), Expect = 3e-42
Identities = 115/132 (87%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 273 actgcttatmaaayaaccaattacttattttcccttacnnbacttantttdcttattant 332
||||||||| ||| |||||||||||||||||||||||| ||||| ||| ||||||| |
Sbjct: 456 actgcttataaaataaccaattacttattttcccttacggtacttaatttgcttattaat 515
Query: 333 gagnyyycgtcttagaacyagctttgtcctatattcttacataatatgtttacataatac 392
| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatatttagtcttagaactag-tttgtcctatattcttacataatatgtttacataatac 574
Query: 393 ttaacttattat 404
||||||||||||
Sbjct: 575 ttaacttattat 586
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.45 0.720 1.36
Gapped
Lambda K H
1.45 0.720 1.36
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1983
Number of Sequences: 1807
Number of extensions: 1983
Number of successful extensions: 141
Number of sequences better than 1.0e-20: 1
length of query: 404
length of database: 10,358,551
effective HSP length: 15
effective length of query: 389
effective length of database: 10,331,446
effective search space: 4018932494
effective search space used: 4018932494
T: 0
A: 40
X1: 5 (10.4 bits)
X2: 14 (29.2 bits)
S1: 11 (23.5 bits)
S2: 47 (98.7 bits)